Medicine-Engineering Interdisciplinary Research

Interactive Liver Segmentation Algorithm Based on Geodesic Distance and V-Net

Expand
  • (a. School of Electrical and Control Engineering; b. School of Electrical Information and Artificial Intelligence,Shaanxi University of Science & Technology, Xi’an 710021, China)

Received date: 2020-12-22

  Online published: 2022-05-02

Abstract

Convolutional neural networks (CNNs) are prone to mis-segmenting image data of the liver when the background is complicated, which results in low segmentation accuracy and unsuitable results for clinical use. To address this shortcoming, an interactive liver segmentation algorithm based on geodesic distance and V-net is proposed. The three-dimensional segmentation network V-net adequately considers the characteristics of the spatial context information to segment liver medical images and obtain preliminary segmentation results. An artificial algorithm based on geodesic distance is used to form artificial hard constraints to modify the image,and the superpixel piece created by the watershed algorithm is introduced as a sample point for operation, which significantly improves the efficiency of segmentation. Results from simulation of the liver tumor segmentation challenge (LiTS) dataset show that this algorithm can effectively refine the results of automatic liver segmentation,reduce user intervention, and enable a fast, interactive liver image segmentation that is convenient for doctors.

Cite this article

KANG Jie* (亢洁), DING Jumin (丁菊敏), LEI Tao (雷涛),FENG Shujie (冯树杰), LIU Gang (刘港) . Interactive Liver Segmentation Algorithm Based on Geodesic Distance and V-Net[J]. Journal of Shanghai Jiaotong University(Science), 2022 , 27(2) : 190 -201 . DOI: 10.1007/s12204-021-2379-0

References

[1] APOLLON Z, DIONISSIOS K, DIMITRIOS K, et al.A hybrid segmentation approach for rapid and reliable liver volumetric analysis in daily clinical practice [C]//2015 IEEE 15th International Conference on Bioinformatics and Bioengineering. Belgrade, Serbia:IEEE, 2015: 1-6. [2] WANG R, ZHANG F, ZHAN W, et al. Liver CT images segmentation based on fuzzy C-means clustering with spatial constraints [J]. Journal of Computer Applications,2019, 39(11): 3366-3369 (in Chinese). [3] RAFIEI S, KARIMI N, MIRMAHBOUB B, et al.Liver segmentation in abdominal CT images using probabilistic atlas and adaptive 3D region growing [C]//2019 41st Annual International Conference of the IEEE, Engineering in Medicine and Biology Society,Berlin, Germany: IEEE, 2019: 6310-6313. [4] ZHENG Z, ZHANG X, ZHENG S, et al. Liver segmentation in CT images based on region-growing and unified level set method [J]. Journal of Zhejiang University(Engineering Science), 2018, 52(12): 2382-2396(in Chinese). [5] BERECIARTUA A, PICON A, GALDRAN A, et al.Automatic 3D model-based method for liver segmentation in MRI based on active contours and total variation minimization [J]. Biomedical Signal Processing and Control, 2015, 20: 71-77. [6] LUO Q, LIN W, QIN W. Liver segmentation method based on kernel graph cuts with shape priors [J].Computer Engineering and Design, 2014, 35(6): 2084-2089 (in Chinese). [7] BEN-COHEN A, DIAMANT I, KLANG E, et al. Fully convolutional network for liver segmentation and lesions detection [M]//Deep learning and data labeling for medical applications. Cham: Springer, 2016: 77-85. [8] CHRIST P F, ELSHAER M E A, ETTINGER F, et al. Automatic liver and lesion segmentation in CT using cascaded fully convolutional neural networks and 3D conditional random fields [M]//Medical image computing and computer-assisted intervention: MICCAI 2016. Cham: Springer, 2016: 415-423. [9] GUO S, MA S, LI J, et al. Fully convolutional neural network for liver segmentation in CT image [J].Computer Engineering and Applications, 2017, 53(18):126-131 (in Chinese). [10] ZHANG Y, HE Z, ZHONG C, et al. Fully convolutional neural network with post-processing methods for automatic liver segmentation from CT [C]//2017 Chinese Automation Congress. Jinan, China: IEEE,2017: 3864-3869. [11] LEI T, ZHOU W, ZHANG Y, et al. Lightweight V-net for liver segmentation [C]//2020 IEEE International Conference on Acoustics, Speech and Signal Processing.Barcelona, Spain: IEEE, 2020: 1379-1383. [12] JIANG B, ZHANG Y, ZHANG L, et al. A visualization study of deep convolutional neural network to classify the pathological type of sub-soild pulmonary adenocarcinoma of 3 cm based on CT images [J]. Journal of Shanghai Jiao Tong University (Medical Science),2019, 39(9): 1045-1051 (in Chinese). [13] HE K, ZHANG X, REN S, et al. Delving deep into rectifiers: Surpassing human-level performance on ImageNet classification [C]//2015 IEEE International Conference on Computer Vision. Santiago, Chile:IEEE, 2015: 1026-1034. [14] WIESEL A. Geodesic convexity and covariance estimation [J]. IEEE Transactions on Signal Processing,2012, 60(12): 6182-6189. [15] XU Y, ZHAO J. Segmentation of haustral folds and polyps on haustral folds in CT colonography using complementary geodesic distance transformation [J].Journal of Shanghai Jiao Tong University (Science),2014, 19(5): 513-520. [16] PROTIERE A, SAPIRO G. Interactive image segmentation via adaptive weighted distances [J]. IEEE Transactions on Image Processing, 2007, 16(4): 1046-1057.
Outlines

/